Article Sidebar

Submitted
August 28, 2019
Accepted
December 31, 2019
Published
January 2, 2020
Download
PDF
Statistic
Read Counter : 1183 Download : 770

Main Article Content

Abstract

The aim of this study was to generate the bioinformatics analysis of the circulating NDVs in Southeast Asia, East Asia, and the vaccine virus strains through a database of isolates stored in GenBank® (National Center for Biotechnology Information, USA). The used isolates were AJ629062.1 (La Sota), AF309418.1 (B1), EF201805.1 (Mukteswar), KT445901.1 (Komarov), JX524203.1 (V4), AY935499.2 (I-2), KC987036.1 (F), KF767104.1 (Indonesia), KF767105.1 (Indonesia), KF767106.1 (Indonesia), HQ697255.1 (Indonesia), HQ697256.1 (Indonesia), HQ697261.1 (Indonesia), JX012096.2 (Malaysia), GU332646.1 (Vietnam), AF358786.1 (Taiwan), AF358788.1 (China), KT380032.1 (Republic of Korea), and KC503416.1 (Japan). As the results, this study have revealed the data of homology, pathotype, genetic distance, B cell epitope prediction, and molecular phylogenetic analysis of circulating NDVs in Southeast Asia and East Asia and vaccine virus strains. Thus, the results of this study can be used as a reference for vaccine design studies in the applications of poultry vaccine industry

Received: 28 August 2019; Accepted: 31 December 2019; Published: 11 January 2020.

Keywords

Bioinformatics analysis Newcastle disease poultry vaccine design

Article Details

License

Authors who publish with this journal agree to the following terms:

  1. Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgment of the work's authorship and initial publication in this journal.
  2. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgment of its initial publication in this journal.
  3. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).
How to Cite
Ansori, A. N. M., & Kharisma, V. D. (2020). Characterization of Newcastle Disease Virus in Southeast Asia and East Asia: Fusion Protein Gene. EKSAKTA: Journal of Sciences and Data Analysis, 20(1), 14–20. https://doi.org/10.20885/EKSAKTA.vol1.iss1.art3
Download Citation
Endnote/Zotero/Mendeley (RIS)
BibTeX
Crossref
Scopus
Google Scholar
Europe PMC

References

  1. B. Xiang, L. Han, P. Gao, R. You, F. Wang, J. Xiao, M. Liao, Y. Kang, T. Ren, Spillover of Newcastle disease viruses from poultry to wild birds in Guangdong province, southern China, Infection, Genetics and Evolution 55 (2017) 199-204.
  2. I. Cornax, P.J. Miller, C.L. Afonso, Characterization of live LaSota vaccine strain–induced protection in chickens upon early challenge with a virulent Newcastle disease virus of heterologous genotype, Avian diseases 56(3) (2012) 464-470.
  3. M. Mase, K. Imai, Y. Sanada, N. Sanada, N. Yuasa, T. Imada, K. Tsukamoto, S. Yamaguchi, Phylogenetic analysis of Newcastle disease virus genotypes isolated in Japan, Journal of Clinical Microbiology 40(10) (2002) 3826-3830.
  4. E. Serrão, J. Meers, R. Pym, R. Copland, D. Eagles, J. Henning, Prevalence and incidence of Newcastle disease and prevalence of Avian Influenza infection of scavenging village chickens in Timor-Lesté, Preventive veterinary medicine 104(3-4) (2012) 301-308.
  5. B. Nath, S. Kumar, Emerging variant of genotype XIII Newcastle disease virus from Northeast India, Acta tropica 172 (2017) 64-69.
  6. S.S. Ewies, A. Ali, S.M. Tamam, H.M. Madbouly, Molecular characterization of Newcastle disease virus (genotype VII) from broiler chickens in Egypt, Beni-Suef University journal of basic and applied sciences 6(3) (2017) 232-237.
  7. A. Wiseman, E.M. Berman, E. Klement, Risk factors for Newcastle disease in broiler farms in Israel, Preventive veterinary medicine 149 (2018) 92-97
  8. S. Xiao, A. Paldurai, B. Nayak, A. Samuel, E.E. Bharoto, T.Y. Prajitno, P.L. Collins, S.K. Samal, Complete genome sequences of Newcastle disease virus strains circulating in chicken populations of Indonesia, Am Soc Microbiol, 2012.
  9. D.D. Putri, E. Handharyani, R.D. Soejoedono, A. Setiyono, N.L.P.I. Mayasari, O.N. Poetri, Pathotypic characterization of Newcastle disease virus isolated from vaccinated chicken in West Java, Indonesia, Veterinary world 10(4) (2017) 438.
  10. X. Li, Y. Qiu, A. Yu, T. Chai, X. Zhang, J. Liu, D. Wang, H. Wang, Z. Wang, C. Song, Degenerate primers based RT-PCR for rapid detection and differentiation of airborne chicken Newcastle disease virus in chicken houses, Journal of virological methods 158(1-2) (2009) 1-5.
  11. X. Yuan, Y. Wang, J. Yang, H. Xu, Y. Zhang, Z. Qin, H. Ai, J. Wang, Genetic and biological characterizations of a Newcastle disease virus from swine in china, Virology journal 9(1) (2012) 129.
  12. B. Sharma, M. Pokhriyal, G.K. Rai, M. Saxena, B. Ratta, M. Chaurasia, B.S. Yadav, A. Sen, B. Mondal, Isolation of Newcastle disease virus from a non-avian host (sheep) and its implications, Archives of virology 157(8) (2012) 1565-1567.
  13. C.B. Nelson, B.S. Pomeroy, K. Schrall, W.E. Park, R.J. Lindeman, An outbreak of conjunctivitis due to Newcastle disease virus (NDV) occurring in poultry workers, American Journal of Public Health and the Nations Health 42(6) (1952) 672-678.
  14. K. Ganar, M. Das, S. Sinha, S. Kumar, Newcastle disease virus: current status and our understanding, Virus research 184 (2014) 71-81.
  15. K.-S. Choi, E.-K. Lee, W.-J. Jeon, J.-H. Kwon, Antigenic and immunogenic investigation of the virulence motif of the Newcastle disease virus fusion protein, Journal of veterinary science 11(3) (2010) 205-211.
  16. M. Kimura, A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, Journal of molecular evolution 16(2) (1980) 111-120.
  17. K. Tamura, G. Stecher, D. Peterson, A. Filipski, S. Kumar, MEGA6: molecular evolutionary genetics analysis version 6.0, Molecular biology and evolution 30(12) (2013) 2725-2729.
  18. O.R. Adianingsih, V.D. Kharisma, Study of B cell epitope conserved region of the Zika virus envelope glycoprotein to develop multi-strain vaccine, Journal of Applied Pharmaceutical Science 9(01) (2019) 098-103.
  19. I.A. Doytchinova, D.R. Flower, VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines, BMC bioinformatics 8(1) (2007) 4.
  20. H. Zahroh, A. Ma'rup, U.S.F. Tambunan, A.A. Parikesit, Immunoinformatics approach in designing epitope-based vaccine against meningitis-inducing bacteria (Streptococcus pneumoniae, Neisseria meningitidis, and Haemophilus influenzae type b), Drug target insights 10 (2016) DTI-S38458.
  21. X. Duan, P. Zhang, J. Ma, S. Chen, H. Hao, H. Liu, X. Fu, P. Wu, D. Zhang, W. Zhang, Characterization of genotype IX Newcastle disease virus strains isolated from wild birds in the northern Qinling Mountains, China, Virus genes 48(1) (2014) 48-55.
  22. L. Yu, Z. Wang, Y. Jiang, L. Chang, J. Kwang, Characterization of newly emerging Newcastle disease virus isolates from the People's Republic of China and Taiwan, Journal of clinical microbiology 39(10) (2001) 3512-3519.